Automated collection and sharing of adaptive amino acid changes data - Vázquez, N.; Vieira, C.P.; Amorim, B.S.R.; Torres, A.; López-Fernández, H.; Fdez-Riverola, F.; Sousa, J.L.R.; Reboiro-Jato, M.; Vieira, J. (Advances in Intelligent Systems and Computing, 2017)

Description of new genera and species of marine cyanobacteria from the Portuguese Atlantic coast - Brito, Â.; Ramos, V.; Mota, R.; Lima, S.; Santos, A.; Vieira, J.; Vieira, C.P.; Kaštovský, J.; Vasconcelos, V.M.; Tamagnini, P. (Molecular Phylogenetics and Evolution, 2017)

The Drosophila melanogaster Muc68E mucin gene influences adult size, starvation tolerance, and cold recovery - Reis, M.; Silva, A.C.; Vieira, C.P.; Vieira, J. (G3: Genes, Genomes, Genetics, 2016)

Convergent evolution at the gametophytic self-incompatibility system in Malus and Prunus - Aguiar, B.; Vieira, J.; Cunha, A.E.; Fonseca, N.A.; Iezzoni, A.; Van Nocker, S.; Vieira, C.P. (PLoS ONE, 2015)

No evidence for Fabaceae Gametophytic self-incompatibility being determined by Rosaceae, Solanaceae, and Plantaginaceae S-RNase lineage genes - Aguiar, B.; Vieira, J.; Cunha, A.E.; Vieira, C.P. (BMC Plant Biology, 2015)

No evidence for Fabaceae Gametophytic self-incompatibility being determined by Rosaceae, Solanaceae, and Plantaginaceae S-RNase lineage genes - Aguiar, B.; Vieira, J.; Cunha, A.E.; Vieira, C.P. (BMC Plant Biology, 2015)

Niche evolution and thermal adaptation in the temperate species Drosophila americana - Sillero, N.; Reis, M.; Vieira, C.P.; Vieira, J.; Morales-Hojas, R. (Journal of Evolutionary Biology, 2014)

Boosting the Detection of Transposable Elements Using Machine Learning - Loureiro, T.; Camacho, R.; Vieira, J.; Fonseca, N.A. (Advances in Intelligent Systems and Computing, 2013)

Drosophila americana as a model species for comparative studies on the molecular basis of phenotypic variation - Fonseca, N.A.; Morales-Hojas, R.; Reis, M.; Rocha, H.; Vieira, C.P.; Nolte, V.; Schlötterer, C.; Vieira, J. (Genome Biology and Evolution, 2013)

The Drosophila melanogaster methuselah Gene: A Novel Gene with Ancient Functions - Araújo, A.R.; Reis, M.; Rocha, H.; Aguiar, B.; Morales-Hojas, R.; Macedo-Ribeiro, S.; Fonseca, N.A.; Reboiro-Jato, D.; Reboiro-Jato, M.; Fdez-Riverola, F.; Vieira, C.P.; Vieira, J. (PLoS ONE, 2013)

Patterns of evolution at the gametophytic self-incompatibility Sorbus aucuparia (Pyrinae) S pollen genes support the non-self recognition by multiple factors model - Aguiar, B.; Vieira, J.; Cunha, A.E.; Fonseca, N.A.; Reboiro-Jato, D.; Reboiro-Jato, M.; Fdez-Riverola, F.; Raspé, O.; Vieira, C.P. (Journal of Experimental Botany, 2013)

The DAIBAM MITE element is involved in the origin of one fixed and two polymorphic Drosophila virilis phylad inversions - Fonseca, N.A.; Vieira, C.P.; Schlötterer, C.; Vieira, J. (Fly, 2012)

On the development of a pipeline for the automatic detection of positively selected sites - Reboiro-Jato, D.; Reboiro-Jato, M.; Fdez-Riverola, F.; Fonseca, N.A.; Vieira, J. (Advances in Intelligent and Soft Computing, 2012)

Phylogenetic Patterns of Geographical and Ecological Diversification in the Subgenus Drosophila - Morales-Hojas, R.; Vieira, J. (PLoS ONE, 2012)

Two distinct genomic regions, harbouring the period and fruitless genes, affect male courtship song in Drosophila montana - Lagisz, M.; Wen, S. -Y.; Routtu, J.; Klappert, K.; Mazzi, D.; Morales-Hojas, R.; Schäfer, M.A.; Vieira, J.; Hoikkala, A.; Ritchie, M.G.; Butlin, R. K. (Heredity, 2012)

A comparative study of the short term cold resistance response in distantly related Drosophila species: The role of regucalcin and Frost - Reis, M.; Vieira, C.P.; Morales-Hojas, R.; Aguiar, B.; Rocha, H.; Schlötterer, C.; Vieira, J. (PLoS ONE, 2011)

Drosophila genes that affect meiosis duration are among the meiosis related genes that are more often found duplicated - Reis, M.; Sousa-Guimarães, S.; Vieira, C.P.; Sunkel, C.E.; Vieira, J. (PLoS ONE, 2011)

Multiple quantitative trait loci influence intra-specific variation in genital morphology between phylogenetically distinct lines of Drosophila montana - Schäfer, M.A.; Routtu, J.; Vieira, J.; Hoikkala, A.; Ritchie, M.G.; Schlötterer, C. (Journal of Evolutionary Biology, 2011)

Resolving the phylogenetic relationships and evolutionary history of the Drosophila virilis group using multilocus data - Morales-Hojas, R.; Reis, M.; Vieira, C.P.; Vieira, J. (Molecular Phylogenetics and Evolution, 2011)

Evolutionary patterns at the RNase based gametophytic self - Incompatibility system in two divergent Rosaceae groups (Maloideae and Prunus) - Vieira, J.; Ferreira, P.G.; Aguiar, B.; Fonseca, N.A.; Vieira, C.P. (BMC Evolutionary Biology, 2010)

On the identification of human selected loci in grapevines - Vieira, J.; Vieira, C.P. (Heredity, 2010)

A microsatellite linkage map for Drosophila montana shows large variation in recombination rates, and a courtship song trait maps to an area of low recombination - Schäfer, M.A.; Mazzi, D.; Klappert, K.; Kauranen, H.; Vieira, J.; Hoikkala, A.; Ritchie, M.G.; Schlötterer, C. (Journal of Evolutionary Biology, 2010)

Phylogeny of the teashirt-related zinc finger (tshz) gene family and analysis of the developmental expression of tshz2 and tshz3b in the zebrafish - Santos, J.S.; Fonseca, N.A.; Vieira, C.P.; Vieira, J.; Casares, F. (Developmental Dynamics, 2010)

Comparative analysis of five immunity-related genes reveals different levels of adaptive evolution in the virilis and melanogaster groups of Drosophila - Morales-Hojas, R.; Vieira, C.P.; Reis, M.; Vieira, J. (Heredity, 2009)

Gene classification based on amino acid motifs and residues: The DLX (distal-less) test case - Fonseca, N.A.; Vieira, C.P.; Vieira, J. (PLoS ONE, 2009)

RNase-based gametophytic self-incompatibility evolution: Questioning the hypothesis of multiple independent recruitments of the s-pollen gene - Vieira, J.; Fonseca, N.A.; Vieira, C.P. (Journal of Molecular Evolution, 2009)

Genetic and molecular characterization of three novel S-haplotypes in sour cherry (Prunus cerasus L.) - Tsukamoto, T.; Potter, D.; Tao, R.; Vieira, C.P.; Vieira, J.; Iezzoni, A.F. (Journal of Experimental Botany, 2008)

Inferences on the number and frequency of S-pollen gene (SFB) specificities in the polyploid Prunus spinosa - Vieira, J.; Santos, R.A.M.; Ferreira, S.M.; Vieira, C.P. (Heredity, 2008)

Inferring the evolutionary history of Drosophila americana and Drosophila novamexicana using a multilocus approach and the influence of chromosomal rearrangements in single gene analyses - Morales-Hojas, R.; Vieira, C.P.; Vieira, J. (Molecular Ecology, 2008)

On the nature of fur evolution: A phylogenetic approach in Actinobacteria - Santos, C.L.; Vieira, J.; Tavares, F.; Benson, D.R.; Tisa, L.S.; Berry, A.M.; Moradas-Ferreira, P.; Normand, P. (BMC Evolutionary Biology, 2008)

A new 500 kb haplotype associated with high CD8+ T-lymphocyte numbers predicts a less severe expression of hereditary hemochromatosis. - Cruz, E.; Whittington, C.; Krikler, S.H.; Mascarenhas, C.; Lacerda, R.; Vieira, J.; Porto, G. (BMC medical genetics, 2008)

The number, age, sharing and relatedness of S-locus specificities in Prunus - Vieira, J.; Fonseca, N.A.; Santos, R.A.M.; Habu, T.; Tao, R.; Vieira, C.P. (Genetics Research, 2008)

An old bilbo-like non-LTR retroelement insertion provides insight into the relationship of species of the virilis group - Reis, M.; Vieira, C.P.; Morales-Hojas, R.; Vieira, J. (Gene, 2008)

Protein evolution of ANTP and PRD homeobox genes - Fonseca, N.A.; Vieira, C.P.; Holland, P.W.H.; Vieira, J. (BMC Evolutionary Biology, 2008)

The Prunus self-incompatibility locus (S locus) is seldom rearranged - Vieira, J.; Santos, R.A.M.; Habu, T.; Tao, R.; Vieira, C.P. (Journal of Heredity, 2008)

Recombination at prunus S-locus region SLFL1 gene - Vieira, J.; Teles, E.; Santos, R.A.M.; Vieira, C.P. (Genetics, 2008)

An S-RNase-based gametophytic self-incompatibility system evolved only once in eudicots - Vieira, J.; Fonseca, N.A.; Vieira, C.P. (Journal of Molecular Evolution, 2008)

Comparative polytene chromosome maps of D. montana and D. virilis - Morales-Hojas, R.; Päällysaho, S.; Vieira, C.P.; Hoikkala, A.; Vieira, J. (Chromosoma, 2007)

Different positively selected sites at the gametophytic self-incompatibility pistil S-RNase gene in the Solanaceae and Rosaceae (Prunus, Pyrus, and Malus) - Vieira, J.; Morales-Hojas, R.; Santos, R.A.M.; Vieira, C.P. (Journal of Molecular Evolution, 2007)

Modulation of Frankia alni ACN14a oxidative stress response: Activity, expression and phylogeny of catalases - Santos, C.L.; Vieira, J.; Sellstedt, A.; Normand, P.; Moradas-Ferreira, P.; Tavares, F. (Physiologia Plantarum, 2007)

A novel approach for the identification of bacterial taxa-specific molecular markers - Vieira, J.; Mendes, M.V.; Albuquerque, P.; Moradas-Ferreira, P.; Tavares, F. (Letters in Applied Microbiology, 2007)

A putative gene located at the MHC class I region around the D6S105 marker contributes to the setting of CD8+ T-lymphocyte numbers in humans - Vieira, J.; Cardoso, C.S.; Pinto, J.; Patil, K.; Brazdil, P.; Cruz, E.; Mascarenhas, C.; Lacerda, R.; Gartner, A.; Almeida, S.; Alves, H.; Porto, G. (International Journal of Immunogenetics, 2007)

Stereotypies in Rett syndrome: Analysis of 83 patients with and without detected MECP2 mutations - Temudo, T.; Oliveira, P.; Santos, M.; Dias, K.; Vieira, J.; Moreira, A.; Calado, E.; Carrilho, I.; Oliveira, G.; Levy, A.; Barbot, C.; Fonseca, M.; et al. (Neurology, 2007)

The evolutionary history of the transposable element Penelope in the Drosophila virilis group of species - Morales-Hojas, R.; Vieira, C.P.; Vieira, J. (Journal of Molecular Evolution, 2006)

On the location of the gene(s) harbouring the advantageous variant that maintains the X/4 fusion of Drosophila americana - Vieira, C.P.; Almeida, A.; Dias, J.D.; Vieira, J. (Genetical Research, 2006)

A study of 82 extended HLA haplotypes in HFE-C282Y homozygous hemochromatosis subjects: Relationship to the genetic control of CD8+ T-lymphocyte numbers and severity of iron overload - Cruz, E.; Vieira, J.; Almeida, S.; Lacerda, R.; Gartner, A.; Cardoso, C.S.; Alves, H.; Porto, G. (BMC Medical Genetics, 2006)

Variability patterns and positively selected sites at the gametophytic self-incompatibility pollen SFB gene in a wild self-incompatible Prunus spinosa (Rosaceae) population - Nunes, M.D.S.; Santos, R.A.M.; Ferreira, S.M.; Vieira, J.; Vieira, C.P. (New Phytologist, 2006)

Evidence for introgression in differentiated North-American and Finnish Drosophila montana populations - Päällysaho, S.; Vieira, C.P.; Hoikkala, A.; Vieira, J. (Genetica, 2005)

Dynamics and function of intron sequences of the wingless gene during the evolution of the Drosophila genus - Costas, J.; Pereira, P.S.; Vieira, C.P.; Pinho, S.; Vieira, J.; Casares, F. (Evolution and Development, 2004)

Involvement of the Major Histocompatibility Complex region in the regulation regulation of circulating CD8+ T-cell numbers in humans - Cruz, E.; Vieira, J.; Gonçalves, R.; Alves, H.; Almeida, S.; Rodrigues, P.; Lacerda, R.; Porto, G. (Tissue Antigens, 2004)