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Morales-Hojas, R., & Vieira, J. (2012). Phylogenetic Patterns of Geographical and Ecological Diversification in the Subgenus Drosophila. PLoS ONE, 7(11).
Morales-Hojas, R., Reis, M., Vieira, C. P., & Vieira, J. (2011). Resolving the phylogenetic relationships and evolutionary history of the Drosophila virilis group using multilocus data. Molecular Phylogenetics and Evolution, 60(2), 249 - 258.
Morales-Hojas, R. (2009). Molecular systematics of filarial parasites, with an emphasis on groups of medical and veterinary importance, and its relevance for epidemiology. Infection, Genetics and Evolution, 9(5), 748 - 759.
Morales-Hojas, R., & Krueger, A. (2009). The species delimitation problem in the Simulium damnosum complex, blackfly vectors of onchocerciasis. Medical and Veterinary Entomology, 23(3), 257 - 268.
Morales-Hojas, R., Vieira, C. P., Reis, M., & Vieira, J. (2009). Comparative analysis of five immunity-related genes reveals different levels of adaptive evolution in the virilis and melanogaster groups of Drosophila. Heredity, 102(6), 573 - 578.
Morales-Hojas, R., Vieira, C. P., & Vieira, J. (2008). Inferring the evolutionary history of Drosophila americana and Drosophila novamexicana using a multilocus approach and the influence of chromosomal rearrangements in single gene analyses. Molecular Ecology, 17(12), 2910 - 2926.
Morales-Hojas, R., Cheke, R. A., & Post, R. J. (2007). A preliminary analysis of the population genetics and molecular phylogenetics of Onchocerca volvulus (Nematoda: Filarioidea) using nuclear ribosomal second internal transcribed spacer sequences. Memorias do Instituto Oswaldo Cruz, 102(7), 879 - 882.
Morales-Hojas, R., Päällysaho, S., Vieira, C. P., Hoikkala, A., & Vieira, J. (2007). Comparative polytene chromosome maps of D. montana and D. virilis. Chromosoma, 116(1), 21 - 27.
Morales-Hojas, R., Vieira, C. P., & Vieira, J. (2006). The evolutionary history of the transposable element Penelope in the Drosophila virilis group of species. Journal of Molecular Evolution, 63(2), 262 - 273.

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