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Journal Article
Nunes, M. D. S., Santos, R. A. M., Ferreira, S. M., Vieira, J., & Vieira, C. P. (2006). Variability patterns and positively selected sites at the gametophytic self-incompatibility pollen SFB gene in a wild self-incompatible Prunus spinosa (Rosaceae) population. New Phytologist, 172(3), 577 - 587.
Lagisz, M., Wen, S. - Y., Routtu, J., Klappert, K., et al. (2012). Two distinct genomic regions, harbouring the period and fruitless genes, affect male courtship song in Drosophila montana. Heredity, 108(6), 602 - 608.
Cruz, E., Vieira, J., Almeida, S., Lacerda, R., et al. (2006). A study of 82 extended HLA haplotypes in HFE-C282Y homozygous hemochromatosis subjects: Relationship to the genetic control of CD8+ T-lymphocyte numbers and severity of iron overload. BMC Medical Genetics, 7.
Temudo, T., Oliveira, P., Santos, M., Dias, K., et al. (2007). Stereotypies in Rett syndrome: Analysis of 83 patients with and without detected MECP2 mutations. Neurology, 68(15), 1183 - 1187.
Vieira, J., Fonseca, N. A., & Vieira, C. P. (2008). An S-RNase-based gametophytic self-incompatibility system evolved only once in eudicots. Journal of Molecular Evolution, 67(2), 179 - 190.
Vieira, J., Fonseca, N. A., & Vieira, C. P. (2009). RNase-based gametophytic self-incompatibility evolution: Questioning the hypothesis of multiple independent recruitments of the s-pollen gene. Journal of Molecular Evolution, 69(1), 32 - 41.
Morales-Hojas, R., Reis, M., Vieira, C. P., & Vieira, J. (2011). Resolving the phylogenetic relationships and evolutionary history of the Drosophila virilis group using multilocus data. Molecular Phylogenetics and Evolution, 60(2), 249 - 258.
Vieira, J., Teles, E., Santos, R. A. M., & Vieira, C. P. (2008). Recombination at prunus S-locus region SLFL1 gene. Genetics, 180(1), 483 - 491.
Vieira, J., Cardoso, C. S., Pinto, J., Patil, K., et al. (2007). A putative gene located at the MHC class I region around the D6S105 marker contributes to the setting of CD8+ T-lymphocyte numbers in humans. International Journal of Immunogenetics, 34(5), 359 - 367.
Vieira, J., Santos, R. A. M., Habu, T., Tao, R., & Vieira, C. P. (2008). The Prunus self-incompatibility locus (S locus) is seldom rearranged. Journal of Heredity, 99(6), 657 - 660.
Fonseca, N. A., Vieira, C. P., Holland, P. W. H., & Vieira, J. (2008). Protein evolution of ANTP and PRD homeobox genes. BMC Evolutionary Biology, 8(1).
Santos, J. S., Fonseca, N. A., Vieira, C. P., Vieira, J., & Casares, F. (2010). Phylogeny of the teashirt-related zinc finger (tshz) gene family and analysis of the developmental expression of tshz2 and tshz3b in the zebrafish. Developmental Dynamics, 239(3), 1010 - 1018.
Morales-Hojas, R., & Vieira, J. (2012). Phylogenetic Patterns of Geographical and Ecological Diversification in the Subgenus Drosophila. PLoS ONE, 7(11).
Aguiar, B., Vieira, J., Cunha, A. E., Fonseca, N. A., et al. (2013). Patterns of evolution at the gametophytic self-incompatibility Sorbus aucuparia (Pyrinae) S pollen genes support the non-self recognition by multiple factors model. Journal of Experimental Botany, 64(8), 2423 - 2434.
Reis, M., Vieira, C. P., Morales-Hojas, R., & Vieira, J. (2008). An old bilbo-like non-LTR retroelement insertion provides insight into the relationship of species of the virilis group. Gene, 425(1-2), 48 - 55.
Vieira, J., Fonseca, N. A., Santos, R. A. M., Habu, T., et al. (2008). The number, age, sharing and relatedness of S-locus specificities in Prunus. Genetics Research, 90(1), 17 - 26.
Vieira, J., Mendes, M. V., Albuquerque, P., Moradas-Ferreira, P., & Tavares, F. (2007). A novel approach for the identification of bacterial taxa-specific molecular markers. Letters in Applied Microbiology, 44(5), 506 - 512.
Aguiar, B., Vieira, J., Cunha, A. E., & Vieira, C. P. (2015). No evidence for Fabaceae Gametophytic self-incompatibility being determined by Rosaceae, Solanaceae, and Plantaginaceae S-RNase lineage genes. BMC Plant Biology, 15(1).
Cruz, E., Whittington, C., Krikler, S. H., Mascarenhas, C., et al. (2008). A new 500 kb haplotype associated with high CD8+ T-lymphocyte numbers predicts a less severe expression of hereditary hemochromatosis. BMC medical genetics, 9, 97.
Santos, C. L., Vieira, J., Tavares, F., Benson, D. R., et al. (2008). On the nature of fur evolution: A phylogenetic approach in Actinobacteria. BMC Evolutionary Biology, 8(1).
Schäfer, M. A., Routtu, J., Vieira, J., Hoikkala, A., et al. (2011). Multiple quantitative trait loci influence intra-specific variation in genital morphology between phylogenetically distinct lines of Drosophila montana. Journal of Evolutionary Biology, 24(9), 1879 - 1886.
Santos, C. L., Vieira, J., Sellstedt, A., Normand, P., et al. (2007). Modulation of Frankia alni ACN14a oxidative stress response: Activity, expression and phylogeny of catalases. Physiologia Plantarum, 130(3), 454 - 463.
Schäfer, M. A., Mazzi, D., Klappert, K., Kauranen, H., et al. (2010). A microsatellite linkage map for Drosophila montana shows large variation in recombination rates, and a courtship song trait maps to an area of low recombination. Journal of Evolutionary Biology, 23(3), 518 - 527.

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